00001 /* ooc.h - Stuff to handle overused N-mers (tiles) in genome 00002 * indexing schemes. */ 00003 /* Copyright 2001-2002 Jim Kent. All rights reserved. */ 00004 00005 #ifndef OOC_H 00006 #define OOC_H 00007 00008 void oocMaskCounts(char *oocFile, bits32 *tileCounts, int tileSize, bits32 maxPat); 00009 /* Set items of tileCounts to maxPat if they are in oocFile. 00010 * Effectively masks this out of index.*/ 00011 00012 void oocMaskSimpleRepeats(bits32 *tileCounts, int seedSize, bits32 maxPat); 00013 /* Mask out simple repeats in index . */ 00014 00015 #endif /* OOC_H */ 00016
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