inc/ens.h File Reference

#include "dnautil.h"
#include "dlist.h"
#include "unfin.h"

Include dependency graph for ens.h:

Go to the source code of this file.

Data Structures
struct	ensAnalysis
struct	ensFeature
struct	ensExon
struct	ensTranscript
struct	ensGene
Functions
void	ensGetAnalysisTable (struct ensAnalysis ***retTable, int *retCount)
dnaSeq *	ensDnaInBacRange (char *clone, int start, int end, enum dnaCase dnaCase)
dnaSeq *	ensDnaInBac (char *clone, enum dnaCase dnaCase)
ensFeature *	ensGetFeature (char *featureId)
ensFeature *	ensFeaturesInBac (char *clone)
ensFeature *	ensFeaturesInBacRange (char *clone, int start, int end)
void	ensFreeFeature (struct ensFeature **pFeature)
void	ensFreeFeatureList (struct ensFeature **pFeatureList)
slName *	ensGeneNamesInBac (char *bacName)
ensGene *	ensGetGene (char *geneName)
ensGene *	ensGenesInBac (char *bacName)
ensGene *	ensGenesInBacRange (char *bacName, int start, int end)
void	ensFreeGene (struct ensGene **pGene)
void	ensFreeGeneList (struct ensGene **pGeneList)
void	ensParseContig (char *combined, char retBac[32], int *retContig)
int	ensBrowserCoordinates (struct contigTree *contig, int x)
int	ensSubmitCoordinates (struct contigTree *contig, int x)
int	ensBacBrowserLength (char *clone)
int	ensBacSubmitLength (char *clone)
contigTree *	ensBacContigs (char *bacId)
contigTree *	ensGetContig (char *contigId)
void	ensTranscriptBounds (struct ensTranscript *trans, int *retStart, int *retEnd)
void	ensGeneBounds (struct ensGene *gene, int *retStart, int *retEnd)

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Function Documentation

int ensBacBrowserLength

(

char *

clone

)

struct contigTree* ensBacContigs

(

char *

bacId

)

[read]

int ensBacSubmitLength

(

char *

clone

)

int ensBrowserCoordinates	(	struct contigTree *	contig,
		int	x
	)

struct dnaSeq* ensDnaInBac	(	char *	clone,
		enum dnaCase	dnaCase
	)			[read]

struct dnaSeq* ensDnaInBacRange	(	char *	clone,
		int	start,
		int	end,
		enum dnaCase	dnaCase
	)			[read]

struct ensFeature* ensFeaturesInBac

(

char *

clone

)

[read]

struct ensFeature* ensFeaturesInBacRange	(	char *	clone,
		int	start,
		int	end
	)			[read]

void ensFreeFeature

(

struct ensFeature **

pFeature

)

void ensFreeFeatureList

(

struct ensFeature **

pFeatureList

)

void ensFreeGene

(

struct ensGene **

pGene

)

void ensFreeGeneList

(

struct ensGene **

pGeneList

)

void ensGeneBounds	(	struct ensGene *	gene,
		int *	retStart,
		int *	retEnd
	)

struct slName* ensGeneNamesInBac

(

char *

bacName

)

[read]

struct ensGene* ensGenesInBac

(

char *

bacName

)

[read]

struct ensGene* ensGenesInBacRange	(	char *	bacName,
		int	start,
		int	end
	)			[read]

void ensGetAnalysisTable	(	struct ensAnalysis ***	retTable,
		int *	retCount
	)

struct contigTree* ensGetContig

(

char *

contigId

)

[read]

struct ensFeature* ensGetFeature

(

char *

featureId

)

[read]

struct ensGene* ensGetGene

(

char *

geneName

)

[read]

void ensParseContig	(	char *	combined,
		char	retBac[32],
		int *	retContig
	)

int ensSubmitCoordinates	(	struct contigTree *	contig,
		int	x
	)

void ensTranscriptBounds	(	struct ensTranscript *	trans,
		int *	retStart,
		int *	retEnd
	)

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