inc/dnaLoad.h File Reference

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Functions
dnaLoad *	dnaLoadOpen (char *fileName)
dnaSeq *	dnaLoadNext (struct dnaLoad *dl)
int	dnaLoadCurStart (struct dnaLoad *dl)
int	dnaLoadCurEnd (struct dnaLoad *dl)
int	dnaLoadCurSize (struct dnaLoad *dl)
void	dnaLoadClose (struct dnaLoad **pDl)
dnaSeq *	dnaLoadAll (char *fileName)

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Function Documentation

struct dnaSeq* dnaLoadAll

(

char *

fileName

)

[read]

Definition at line 260 of file dnaLoad.c.

References dnaLoadClose(), dnaLoadNext(), dnaLoadOpen(), slAddHead, and slReverse().

{
struct dnaLoad *dl = dnaLoadOpen(fileName);
struct dnaSeq *seqList = NULL, *seq;
while ((seq = dnaLoadNext(dl)) != NULL)
    {
    slAddHead(&seqList, seq);
    }
dnaLoadClose(&dl);
slReverse(seqList);
return seqList;
}

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void dnaLoadClose

(

struct dnaLoad **

pDl

)

Definition at line 85 of file dnaLoad.c.

References dnaLoadStackFreeList(), freeMem(), freez(), dnaLoad::stack, and dnaLoad::topFileName.

Referenced by dnaLoadAll().

{
struct dnaLoad *dl = *pDl;
if (dl != NULL)
    {
    dnaLoadStackFreeList(&dl->stack);
    freeMem(dl->topFileName);
    freez(pDl);
    }
}

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int dnaLoadCurEnd

(

struct dnaLoad *

dl

)

Definition at line 286 of file dnaLoad.c.

References dnaLoad::curEnd.

{
return dl->curEnd;
}

int dnaLoadCurSize

(

struct dnaLoad *

dl

)

Definition at line 295 of file dnaLoad.c.

References dnaLoad::curSize.

{
return dl->curSize;
}

int dnaLoadCurStart

(

struct dnaLoad *

dl

)

Definition at line 277 of file dnaLoad.c.

References dnaLoad::curStart.

{
return dl->curStart;
}

struct dnaSeq* dnaLoadNext

(

struct dnaLoad *

dl

)

[read]

Definition at line 251 of file dnaLoad.c.

References dnaLoad::curEnd, dnaLoad::curSize, dnaLoad::curStart, and dnaLoadStackOrSingle().

Referenced by dnaLoadAll().

{
struct dnaSeq *seq;
dl->curSize = dl->curStart = dl->curEnd = 0;
seq = dnaLoadStackOrSingle(dl);
return seq;
}

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struct dnaLoad* dnaLoadOpen

(

char *

fileName

)

[read]

Definition at line 97 of file dnaLoad.c.

References AllocVar, cloneString(), and dnaLoad::topFileName.

Referenced by dnaLoadAll().

{
struct dnaLoad *dl;
AllocVar(dl);
dl->topFileName = cloneString(fileName);
return dl;
}

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