00001 /* chainToAxt - convert from chain to axt format. */ 00002 00003 #ifndef CHAINTOAXT_H 00004 #define CHAINTOAXT_H 00005 00006 struct axt *chainToAxt(struct chain *chain, 00007 struct dnaSeq *qSeq, int qOffset, 00008 struct dnaSeq *tSeq, int tOffset, int maxGap, int maxChain); 00009 /* Convert a chain to a list of axt's. This will break 00010 * where there is a double-sided gap in chain, or 00011 * where there is a single-sided gap greater than maxGap, or 00012 * where there is a chain longer than maxChain. 00013 */ 00014 00015 #endif /* CHAINTOAXT_H */
1.5.2